The largest holder of RAPT stocks is the Column Group II, which holds approximately 6.8 million shares as of their February 2020 filing. RAPT has around 24 million shares outstanding, of which, roughly 10.8 million shares are held by institutions, which equates to 44.5% of outstanding shares. So lets take a closer look and see how we are playing it moving forward. Year to date, RAPT is slightly higher, however the stock has nearly doubled since we first added this holding to our trade ideas and designating it a core position. Wong boasts over 20 year of experience and has come to RAPT from Five Prime Therapeutics (FPRX), and previously, Roche where he served as director in the Inflammation Disease Biology Area. RAPT is lead by their President and CEO Dr. RAPT is a clinical stage company that is focused on discovering, developing, and (hopefully) commercializing oral small molecule drugs for oncology indications and inflammatory diseases. RAPT filed its IPO in October of 2019, and thus is a fairly new company in the world as a publicly traded company. This file catches all output to stdout and stderr by anything, and may be helpful to identify the problem should any happens.RAPT Therapeutics (RAPT) is a small-cap biotechnology company with a market cap around $646 million. Empty if no foreign contaminant was found.Īlong with the tarball there is also a run.log file generated automatically by the Google Life Sciences Pipeline where RAPT is invoked.
calls.tab: tab-delimited file of the coordinates of detected foreign sequence. annot.fna: multifasta file of the trancripts annotated on the genome. annot.faa: multifasta file of the proteins annotated on the genome. annot.sqn: annotated genome in ASN format. annot.gff: annotated genome in GFF3 format. annot.gbk: annotated genome in GenBank flat file format. PGAP annotation results in multiple formats:. RAPT UP VERIFICATION
ani-tax-report.txt and ani-tax-report.xml: Taxonomy verification results in text or XML format. : multifasta files of the assembled contigs produced by SKESA. verbose.log is a detailed log file of all the actions and console outputs that RAPT performed for your run. concise.log is file with the log of major stages and status of your RAPT run. The tarball contains the following files: GCP RAPT generates a tarball named in your designated bucket, under a "directory" named after the 10-character job-id assigned at the start of the execution (i.e. If you have other questions, please visit our FAQs page. To get more execution details and examples in our wiki page. Run_rapt_gcp.sh joblist | fgrep b2ac02d7c7 Progress of this job can be viewed in GCP stackdriver log viewer at: Output storage: gs://your_results_bucket/b2ac02d7c7 Here is an example command using a file available in the bucket named your_input_bucket: The genus species of the sequenced organism needs to be provided on the command line. The file needs to be copied to the Google storage bucket before you run run_rapt_gcp.sh. Note that the quality scores are not necessary. This file can contain paired-end reads, with the two reads of a pair adjacent to each other in the file or single-end reads. You can use a fastq or a fasta file produced by Illumina sequencers as input to RAPT. Please note that some runs may take up to 24 hours. The results for the job will be available in the bucket you specified after the job is marked 'Done'. JOB_ID USER LABEL SRR STATUS START_TIME END_TIME OUTPUT_URIĥ541b09bb9 tester SRR3496277 Running T18:52:30 gs://your_results_bucket/2565f37562 
Additional instructions are available on our wiki page.ĭownload the latest release by executing the following commands: Here are instructions to execute RAPT once your system is set up. GCP RAPT will bring up and shut down Google instances as needed.
Access to a Google storage bucket for your data - for help see Quick start using a Cloud Shell. Cloud Life Sciences API enabled for your project - for help see Quick start using a Cloud Shell. gsutil tool installed (automatically enabled in Cloud Shell). gcloud SDK installed (automatically enabled in Cloud Shell). It can be conveniently invoked from the Google Cloud Shell or any computer with the following prerequisites: GCP RAPT is designed to run on the Google Cloud Platform (GCP), it has no special hardware requirements for the local machine (the one where run_rapt_gcp.sh runs). Please see our wiki page for References, Licenses, FAQs, and In-depth Documentation and Examples. Some basic knowledge of Unix/Linux commands, SKESA, and PGAP is useful in completing this tutorial. run_rapt_gcp.sh is a shell script provides a command line interface to run GCP RAPT. This page contains instruction and examples for running GCP RAPT. Google Cloud Platform (GCP) RAPT – Documentation
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